Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496627	1.00[JPT][hapmap]
rs11675400	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11677559	1.00[CEU][hapmap]
rs11678185	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11683942	0.93[EUR][1000 genomes]
rs11686392	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11687196	0.95[EUR][1000 genomes]
rs11689672	0.89[CEU][hapmap]
rs11694708	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13412940	1.00[JPT][hapmap]
rs1439140	1.00[CEU][hapmap]
rs17010871	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17211596	1.00[CEU][hapmap]
rs17211765	1.00[CEU][hapmap]
rs17212475	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17213071	1.00[CEU][hapmap]
rs17213092	1.00[CEU][hapmap]
rs17213203	1.00[CEU][hapmap]
rs17279088	1.00[CEU][hapmap]
rs2420554	1.00[CEU][hapmap]
rs2901195	1.00[CEU][hapmap]
rs4563225	1.00[CEU][hapmap]
rs73954526	0.81[EUR][1000 genomes]
rs73954528	0.83[EUR][1000 genomes]
rs7567589	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124870400-124876400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:124870600-124873800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: