Variant report

Variant	rs11687196
Chromosome Location	chr2:124922237-124922238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11675400	0.84[EUR][1000 genomes]
rs11678185	0.86[EUR][1000 genomes]
rs11683942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11686392	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17279639	0.95[EUR][1000 genomes]
rs73954528	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124920600-124922600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:124920800-124923800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:124921800-124923200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:124922000-124924000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr2:124922000-124925000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:124922200-124922600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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