Variant report

Variant	rs17212475
Chromosome Location	chr2:124835790-124835791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10496631	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10496633	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11675400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677559	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11677801	1.00[ASN][1000 genomes]
rs11678185	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680010	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680902	1.00[ASN][1000 genomes]
rs11686392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689672	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693472	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693557	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213971	1.00[CHB][hapmap]
rs1358669	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1439131	1.00[CHB][hapmap]
rs1439140	1.00[CEU][hapmap]
rs17209500	1.00[ASN][1000 genomes]
rs17211596	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17213071	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17213092	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17269066	1.00[ASN][1000 genomes]
rs17269122	1.00[ASN][1000 genomes]
rs17270902	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279088	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17279639	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17319464	1.00[CHB][hapmap]
rs17319680	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17319771	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17666092	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17666152	1.00[CHB][hapmap]
rs17722007	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17722506	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2420554	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73954526	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954528	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2762279	chr2:124827023-124840027	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124835400-124838800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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