Variant report

Variant	rs1358669
Chromosome Location	chr2:125024427-125024428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10496631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10496633	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11123042	1.00[CHB][hapmap]
rs11675400	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11677559	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11686392	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11689115	1.00[CHB][hapmap]
rs11694708	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12373656	1.00[CHB][hapmap]
rs1430251	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1430268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1439140	0.89[CEU][hapmap]
rs1529296	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1574504	1.00[CHB][hapmap]
rs17212475	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17213071	1.00[CHB][hapmap]
rs17213092	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17279088	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17319771	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17665763	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17665782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17666092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17666152	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17666488	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17667754	1.00[AFR][1000 genomes]
rs17673411	1.00[AFR][1000 genomes]
rs17722007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17722506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17722749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17725595	1.00[CHB][hapmap]
rs17725619	1.00[CHB][hapmap]
rs2003039	1.00[CHB][hapmap]
rs2420554	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125021600-125024800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:125024000-125025800	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:125024200-125024600	Enhancers	Brain Hippocampus Middle	brain
4	chr2:125024200-125024800	Enhancers	Fetal Brain Male	brain
5	chr2:125024200-125025000	Enhancers	Fetal Lung	lung
6	chr2:125024200-125025600	Enhancers	Fetal Stomach	stomach

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