Variant report

Variant	rs11123042
Chromosome Location	chr2:125176030-125176031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125174830..125176422-chr2:125208207..125210558,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10445856	1.00[CHB][hapmap]
rs10445857	1.00[CHB][hapmap]
rs10496631	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10496633	1.00[CHB][hapmap]
rs11123041	0.81[CEU][hapmap]
rs11123043	0.81[CEU][hapmap]
rs11680355	1.00[CEU][hapmap]
rs11689115	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs11888989	1.00[CHB][hapmap]
rs12373656	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1304052	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1358669	1.00[CHB][hapmap]
rs1394144	1.00[CHB][hapmap]
rs1394145	1.00[CHB][hapmap]
rs1430251	1.00[CHB][hapmap]
rs1430268	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1503997	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1504000	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1529296	1.00[ASN][1000 genomes]
rs1574504	1.00[CHB][hapmap]
rs17320237	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17392197	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17665763	1.00[ASN][1000 genomes]
rs17665782	1.00[ASN][1000 genomes]
rs17666092	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17666152	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17666488	1.00[ASN][1000 genomes]
rs17667754	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs17722007	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17722506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17722749	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17725356	0.81[CEU][hapmap]
rs17725595	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17725619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1827596	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1835353	0.81[CEU][hapmap]
rs1847429	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2003039	1.00[CHB][hapmap]
rs2059980	1.00[ASW][hapmap]
rs4555349	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs4848936	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs59694583	1.00[ASN][1000 genomes]
rs62171029	1.00[ASN][1000 genomes]
rs6541957	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs6541961	1.00[CHB][hapmap]
rs6708079	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7594672	0.81[CEU][hapmap]
rs779988	1.00[ASN][1000 genomes]
rs869760	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs905630	0.81[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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