Variant report
| Variant | rs11680355 |
|---|---|
| Chromosome Location | chr2:125190417-125190418 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:125185428..125187787-chr2:125189293..125191485,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11123041 | 0.85[CEU][hapmap] |
| rs11123042 | 1.00[CEU][hapmap] |
| rs11123043 | 1.00[CEU][hapmap] |
| rs11689115 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12373656 | 0.85[CEU][hapmap] |
| rs1304052 | 0.85[CEU][hapmap] |
| rs1394144 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs1394145 | 0.83[EUR][1000 genomes] |
| rs1503997 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs1504000 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1504002 | 0.85[EUR][1000 genomes] |
| rs17725356 | 1.00[CEU][hapmap] |
| rs17725595 | 0.85[CEU][hapmap] |
| rs17725619 | 1.00[CEU][hapmap] |
| rs1827596 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs1835353 | 1.00[CEU][hapmap] |
| rs1847429 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs2089104 | 0.85[EUR][1000 genomes] |
| rs4555349 | 0.85[CEU][hapmap] |
| rs4848936 | 0.84[CEU][hapmap] |
| rs6541957 | 0.84[CEU][hapmap] |
| rs6708079 | 1.00[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs6711296 | 0.85[EUR][1000 genomes] |
| rs6722877 | 1.00[ASN][1000 genomes] |
| rs7594672 | 0.85[CEU][hapmap] |
| rs869760 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs905630 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
