Variant report
| Variant | rs1835353 |
|---|---|
| Chromosome Location | chr2:125163827-125163828 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11123041 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11123042 | 0.81[CEU][hapmap] |
| rs11123043 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs11680355 | 1.00[CEU][hapmap] |
| rs11689115 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs12373656 | 1.00[CEU][hapmap] |
| rs1304052 | 1.00[CEU][hapmap] |
| rs1394144 | 1.00[CEU][hapmap] |
| rs1394145 | 0.88[CEU][hapmap] |
| rs1503997 | 1.00[CEU][hapmap] |
| rs1504000 | 1.00[CEU][hapmap] |
| rs17725356 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs17725595 | 1.00[CEU][hapmap] |
| rs17725619 | 0.81[CEU][hapmap] |
| rs1827596 | 1.00[CEU][hapmap] |
| rs1847429 | 1.00[CEU][hapmap] |
| rs2584356 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4555349 | 1.00[CEU][hapmap] |
| rs4848936 | 1.00[CEU][hapmap] |
| rs6541957 | 1.00[CEU][hapmap] |
| rs6708079 | 1.00[CEU][hapmap] |
| rs7594672 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs869760 | 1.00[CEU][hapmap] |
| rs905630 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
