Variant report

Variant	rs62171029
Chromosome Location	chr2:125119749-125119750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10496631	1.00[ASN][1000 genomes]
rs1430268	1.00[ASN][1000 genomes]
rs1529296	1.00[ASN][1000 genomes]
rs17319680	1.00[ASN][1000 genomes]
rs17665763	1.00[ASN][1000 genomes]
rs17665782	1.00[ASN][1000 genomes]
rs17666092	1.00[ASN][1000 genomes]
rs17666152	1.00[ASN][1000 genomes]
rs17666488	1.00[ASN][1000 genomes]
rs17722007	1.00[ASN][1000 genomes]
rs17722506	1.00[ASN][1000 genomes]
rs17722749	1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv979374	chr2:125107084-125122261	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125119400-125119800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr2:125119600-125120000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr2:125119600-125120000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr2:125119600-125120000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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