Variant report

Variant	rs11888989
Chromosome Location	chr2:125321788-125321789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10187894	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10445856	1.00[CHB][hapmap]
rs10445857	1.00[CHB][hapmap]
rs11123042	1.00[CHB][hapmap]
rs11689115	1.00[CHB][hapmap]
rs11892163	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11899245	1.00[CHB][hapmap]
rs12373656	1.00[CHB][hapmap]
rs13008208	1.00[JPT][hapmap]
rs13020806	1.00[CHB][hapmap]
rs13021695	1.00[JPT][hapmap]
rs13029736	1.00[JPT][hapmap]
rs13031933	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1304052	1.00[CHB][hapmap]
rs1394144	1.00[CHB][hapmap]
rs1394145	1.00[CHB][hapmap]
rs1503997	1.00[CHB][hapmap]
rs1504000	1.00[CHB][hapmap]
rs1574504	1.00[CHB][hapmap]
rs1587787	1.00[JPT][hapmap]
rs17011743	1.00[JPT][hapmap]
rs17320237	1.00[CHB][hapmap]
rs17392197	1.00[CHB][hapmap]
rs17725595	1.00[CHB][hapmap]
rs17725619	1.00[CHB][hapmap]
rs1827596	1.00[CHB][hapmap]
rs1847428	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1847429	1.00[CHB][hapmap]
rs2003039	1.00[CHB][hapmap]
rs34420072	0.93[EUR][1000 genomes]
rs36064320	0.93[EUR][1000 genomes]
rs4555349	1.00[CHB][hapmap]
rs4848936	1.00[CHB][hapmap]
rs6541957	1.00[CHB][hapmap]
rs6541961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6708079	1.00[CHB][hapmap]
rs6748545	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6760693	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7420022	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs869760	1.00[CHB][hapmap]
rs905630	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321000-125321800	Enhancers	HepG2	liver
2	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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