Variant report
| Variant | rs11899245 |
|---|---|
| Chromosome Location | chr2:125518980-125518981 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10445856 | 1.00[CHB][hapmap] |
| rs10445857 | 1.00[CHB][hapmap] |
| rs11888989 | 1.00[CHB][hapmap] |
| rs13020806 | 1.00[CHB][hapmap] |
| rs17320237 | 1.00[CHB][hapmap] |
| rs17392197 | 1.00[CHB][hapmap] |
| rs17392863 | 1.00[ASN][1000 genomes] |
| rs6541961 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834360 | chr2:125492685-125683200 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
