Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125322195..125325080-chr2:125325969..125328591,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10187894	0.93[EUR][1000 genomes]
rs11888989	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs11892163	0.95[EUR][1000 genomes]
rs12611593	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12613338	0.84[ASN][1000 genomes]
rs12613738	0.85[CHB][hapmap]
rs12618039	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12618822	0.88[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12621453	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12623983	0.88[YRI][hapmap]
rs13031933	0.95[EUR][1000 genomes]
rs13386420	0.86[CHB][hapmap]
rs13409718	0.86[CHB][hapmap]
rs1542918	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17011732	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17320347	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1847428	0.92[EUR][1000 genomes]
rs2047877	0.85[YRI][hapmap]
rs2901331	0.86[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs34420072	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151213	0.86[ASN][1000 genomes]
rs36064320	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541961	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs6739605	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6748545	0.91[CEU][hapmap]
rs6760693	0.91[CEU][hapmap]
rs7574777	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125327200-125332000	Enhancers	HepG2	liver
3	chr2:125328200-125329000	Enhancers	Liver	Liver

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