Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12611593	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12613338	0.87[ASN][1000 genomes]
rs12613738	0.82[CHB][hapmap]
rs12618822	1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12621453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008208	0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs13021695	0.89[EUR][1000 genomes]
rs13029736	0.89[EUR][1000 genomes]
rs13430312	0.82[CHB][hapmap]
rs1542918	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1587787	0.89[EUR][1000 genomes]
rs17011732	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17011743	0.89[EUR][1000 genomes]
rs17320347	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2901331	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs34420072	0.96[ASN][1000 genomes]
rs34861575	0.89[EUR][1000 genomes]
rs35151213	0.86[ASN][1000 genomes]
rs36064320	0.96[ASN][1000 genomes]
rs6737746	0.82[CHB][hapmap]
rs6739605	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs7420022	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7601703	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs7601825	0.85[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12618039	KCNE2	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125339600-125340200	Bivalent Enhancer	HepG2	liver
3	chr2:125339600-125342800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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