Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10175329	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs10178625	0.91[EUR][1000 genomes]
rs12611593	0.82[CHB][hapmap]
rs12613738	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs12618039	0.82[CHB][hapmap]
rs12618822	0.85[CHB][hapmap]
rs12621453	0.85[CHB][hapmap]
rs13386420	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap]
rs13409718	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1542918	0.82[CHB][hapmap]
rs17011732	0.85[CHB][hapmap]
rs17320347	0.85[CHB][hapmap]
rs2901331	0.82[CHB][hapmap]
rs6737746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs6737961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs6739605	0.85[CHB][hapmap]
rs72968797	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72968799	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7574777	0.82[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs7601703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7601825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125307600-125310200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:125307800-125310200	Enhancers	Brain Germinal Matrix	brain
3	chr2:125308800-125309200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:125308800-125309600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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