Variant report

Variant	rs1542918
Chromosome Location	chr2:125330422-125330423
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12611593	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12613338	0.98[ASN][1000 genomes]
rs12613738	0.82[CHB][hapmap]
rs12618039	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12618822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12621453	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs13430312	0.82[CHB][hapmap]
rs17011732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17320347	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs2901331	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs34420072	0.86[ASN][1000 genomes]
rs35151213	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36064320	0.86[ASN][1000 genomes]
rs6737746	0.82[CHB][hapmap]
rs6739605	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs7420022	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7601703	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs7601825	0.85[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125327200-125332000	Enhancers	HepG2	liver
3	chr2:125329000-125333000	Weak transcription	Liver	Liver
4	chr2:125329600-125331200	Enhancers	Fetal Lung	lung
5	chr2:125329600-125331400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:125330000-125331800	Enhancers	Fetal Intestine Large	intestine
7	chr2:125330200-125331000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr2:125330400-125330600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr2:125330400-125331000	Enhancers	Fetal Intestine Small	intestine
10	chr2:125330400-125331000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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