Variant report

Variant	rs12613738
Chromosome Location	chr2:125299788-125299789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10175329	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12611593	0.82[CHB][hapmap]
rs12618039	0.82[CHB][hapmap]
rs12618822	0.85[CHB][hapmap]
rs12621453	0.85[CHB][hapmap]
rs13386420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13409718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13430312	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs1542918	0.82[CHB][hapmap]
rs17011732	0.85[CHB][hapmap]
rs17320347	0.85[CHB][hapmap]
rs2901331	0.82[CHB][hapmap]
rs6737746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs6737961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs6739605	0.85[CHB][hapmap]
rs7420022	0.85[CHB][hapmap]
rs7574777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7601703	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7601825	0.85[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv12584	chr2:125299676-125300477	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125291400-125301400	Weak transcription	Brain Germinal Matrix	brain
2	chr2:125291600-125305800	Weak transcription	Right Atrium	heart
3	chr2:125295200-125300000	Weak transcription	Fetal Stomach	stomach
4	chr2:125296600-125302600	Enhancers	Fetal Heart	heart
5	chr2:125297200-125300000	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:125298200-125300400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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