Variant report

Variant	rs10175329
Chromosome Location	chr2:125305542-125305543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12613738	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13386420	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13409718	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430312	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs6737746	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs6737961	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs7574777	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7601703	0.85[CEU][hapmap];0.91[YRI][hapmap]
rs7601825	0.85[CEU][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125291600-125305800	Weak transcription	Right Atrium	heart
2	chr2:125304200-125305800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:125304400-125305600	Enhancers	Fetal Intestine Small	intestine
4	chr2:125304400-125306400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:125304600-125306200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:125304800-125306400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:125305000-125305600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:125305000-125306000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:125305400-125306000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:125305400-125306000	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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