Variant report

Variant	rs2047877
Chromosome Location	chr2:125317108-125317109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10185849	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10188201	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs10496637	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11123050	0.91[CHB][hapmap]
rs11682973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11888767	0.91[CHB][hapmap]
rs11896097	0.91[CHB][hapmap]
rs11899391	0.85[CHB][hapmap]
rs11899392	0.89[CHB][hapmap]
rs12464032	0.91[CHB][hapmap]
rs12464048	0.91[CHB][hapmap]
rs12468237	0.91[CHB][hapmap]
rs12470517	0.91[CHB][hapmap]
rs12623983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12711680	0.81[CHB][hapmap]
rs13030176	0.82[CHB][hapmap]
rs1504006	0.91[CHB][hapmap]
rs1504007	0.89[CHB][hapmap]
rs1504008	0.91[CHB][hapmap]
rs1504009	0.91[CHB][hapmap]
rs1504010	0.86[CHB][hapmap]
rs17011693	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs17011723	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17011727	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17011734	0.82[CHB][hapmap]
rs1857690	0.91[CHB][hapmap]
rs1857691	0.91[CHB][hapmap]
rs1857694	0.91[CHB][hapmap]
rs1875785	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1910527	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2047875	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2047876	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2421091	0.85[CHD][hapmap]
rs4402762	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs4848246	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6541959	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs6707944	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs7420022	0.85[YRI][hapmap]
rs7590741	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125316400-125317400	Enhancers	Brain Hippocampus Middle	brain
2	chr2:125316800-125317400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:125317000-125317400	Flanking Active TSS	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links