Variant report

Variant	rs17011727
Chromosome Location	chr2:125330488-125330489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10185849	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs10188201	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs10496637	0.91[CHB][hapmap];0.85[CHD][hapmap]
rs11123050	0.82[CHB][hapmap]
rs11682973	0.91[CHB][hapmap]
rs11888767	0.82[CHB][hapmap]
rs11896097	0.82[CHB][hapmap]
rs11899391	0.85[CHB][hapmap]
rs11899392	0.84[CHB][hapmap]
rs12464032	0.82[CHB][hapmap]
rs12464048	0.82[CHB][hapmap]
rs12468237	0.82[CHB][hapmap]
rs12470517	0.82[CHB][hapmap]
rs12623983	0.91[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13009233	0.95[ASN][1000 genomes]
rs13030176	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1504006	0.82[CHB][hapmap]
rs1504008	0.82[CHB][hapmap]
rs1504009	0.82[CHB][hapmap]
rs17011693	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs17011723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17011734	0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1857690	0.82[CHB][hapmap]
rs1857691	1.00[ASW][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs1857694	0.82[CHB][hapmap]
rs1910527	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2047875	0.87[CHB][hapmap]
rs2047876	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs2047877	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2421091	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4402762	0.91[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4848246	0.83[CHB][hapmap]
rs59729344	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6541959	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs6707944	0.91[CHB][hapmap];0.90[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125327200-125332000	Enhancers	HepG2	liver
3	chr2:125329000-125333000	Weak transcription	Liver	Liver
4	chr2:125329600-125331200	Enhancers	Fetal Lung	lung
5	chr2:125329600-125331400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:125330000-125331800	Enhancers	Fetal Intestine Large	intestine
7	chr2:125330200-125331000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr2:125330400-125330600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr2:125330400-125331000	Enhancers	Fetal Intestine Small	intestine
10	chr2:125330400-125331000	Enhancers	Stomach Mucosa	stomach

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