Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10185849	0.82[CHB][hapmap]
rs10188201	0.82[CHB][hapmap]
rs10496637	0.82[CHB][hapmap]
rs11682973	0.81[CHB][hapmap]
rs11899391	0.86[CHB][hapmap]
rs12623983	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs13009233	0.92[ASN][1000 genomes]
rs13030176	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs17011693	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs17011723	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs17011727	0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1910527	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs2047876	0.82[CHB][hapmap]
rs2047877	0.82[CHB][hapmap]
rs2421091	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs34283512	0.86[EUR][1000 genomes]
rs4402762	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs4848246	0.82[CHB][hapmap]
rs59729344	0.89[ASN][1000 genomes]
rs6541959	0.82[CHB][hapmap]
rs6707944	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125329000-125333000	Weak transcription	Liver	Liver
3	chr2:125331800-125333200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:125332000-125335200	Weak transcription	HepG2	liver

Quick Search: