Variant report

Variant	rs59729344
Chromosome Location	chr2:125338126-125338127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12623983	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13009233	0.96[ASN][1000 genomes]
rs13030176	0.97[ASN][1000 genomes]
rs17011723	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17011727	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17011734	0.89[ASN][1000 genomes]
rs1910527	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2421091	0.97[ASN][1000 genomes]
rs4402762	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125338000-125338800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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