Variant report

Variant	rs6707944
Chromosome Location	chr2:125315748-125315749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10185849	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs10188201	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs10496637	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11123050	0.91[CHB][hapmap]
rs11682973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11888767	0.91[CHB][hapmap]
rs11896097	0.91[CHB][hapmap]
rs11899391	0.85[CHB][hapmap]
rs11899392	0.89[CHB][hapmap]
rs12464032	0.91[CHB][hapmap]
rs12464048	0.91[CHB][hapmap]
rs12468237	0.91[CHB][hapmap]
rs12470517	0.91[CHB][hapmap]
rs12623983	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12711680	0.81[CHB][hapmap]
rs13030176	0.82[CHB][hapmap]
rs1504006	0.91[CHB][hapmap]
rs1504007	0.89[CHB][hapmap]
rs1504008	0.91[CHB][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1504009	0.91[CHB][hapmap]
rs1504010	0.86[CHB][hapmap]
rs17011693	0.91[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs17011723	0.91[CHB][hapmap]
rs17011727	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs17011734	0.82[CHB][hapmap]
rs1857690	0.91[CHB][hapmap]
rs1857691	0.91[CHB][hapmap]
rs1857694	0.91[CHB][hapmap]
rs1875785	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1910527	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2047875	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2047876	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2047877	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2421091	0.83[CHD][hapmap]
rs4402762	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4848246	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6541959	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7590741	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3437542	chr2:125314184-125315932	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6707944	CLASP1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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