Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125322195..125325080-chr2:125325969..125328591,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10185849	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs10188201	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10496637	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs11123050	0.82[CHB][hapmap]
rs11682973	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11888767	0.82[CHB][hapmap]
rs11896097	0.82[CHB][hapmap]
rs11899391	0.81[CHB][hapmap]
rs12464032	0.82[CHB][hapmap]
rs12464048	0.82[CHB][hapmap]
rs12468237	0.82[CHB][hapmap]
rs12470517	0.82[CHB][hapmap]
rs12623983	0.91[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs12711680	0.82[CHB][hapmap]
rs13003694	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs13011069	0.93[EUR][1000 genomes]
rs13030176	0.82[CHB][hapmap]
rs1504006	0.82[CHB][hapmap]
rs1504007	0.84[CHB][hapmap]
rs1504008	0.82[CHB][hapmap]
rs1504009	0.82[CHB][hapmap]
rs17011723	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs17011727	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs17011734	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs17320299	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs1857690	0.82[CHB][hapmap]
rs1857691	0.82[CHB][hapmap]
rs1857694	0.82[CHB][hapmap]
rs1910527	0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs2047875	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs2047876	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2047877	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs4402762	0.81[CHB][hapmap]
rs4848246	0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6541959	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs6707944	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7590741	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17011693	ARAP2	cis	Brain Pons	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125321600-125345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125323600-125325200	Enhancers	Liver	Liver
3	chr2:125323600-125326000	Enhancers	HepG2	liver
4	chr2:125324600-125326000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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