Variant report

Variant	rs10496637
Chromosome Location	chr2:125307190-125307191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125303094..125305884-chr2:125306381..125308286,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10172675	0.89[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs10185849	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10188201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs11123050	0.91[CHB][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes]
rs11123051	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11682973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11888767	0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11888769	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11888843	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11890281	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11890329	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11890408	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11890427	0.81[ASN][1000 genomes]
rs11896097	0.91[CHB][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11899391	0.85[CHB][hapmap]
rs11899392	0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12464032	0.91[CHB][hapmap];0.80[AMR][1000 genomes]
rs12464048	0.91[CHB][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes]
rs12466201	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12468237	0.91[CHB][hapmap];0.80[AMR][1000 genomes]
rs12470517	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs12472000	0.80[AMR][1000 genomes]
rs12623983	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12711680	0.81[CHB][hapmap]
rs13030176	0.82[CHB][hapmap]
rs1504005	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1504006	0.91[CHB][hapmap];0.83[YRI][hapmap]
rs1504007	0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs1504008	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs1504009	0.91[CHB][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1504010	0.86[CHB][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17011693	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs17011723	0.91[CHB][hapmap]
rs17011727	0.91[CHB][hapmap];0.85[CHD][hapmap]
rs17011734	0.82[CHB][hapmap]
rs1857690	0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1857691	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs1857693	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1857694	0.91[CHB][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1875784	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1875785	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1910527	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2047875	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047876	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2047877	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2421091	0.83[CHD][hapmap]
rs3941391	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4402762	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4848246	0.91[CHB][hapmap]
rs6541959	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap]
rs6707944	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs6734052	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7590741	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7601716	0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125306200-125307800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:125306400-125308800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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