Variant report

Variant	rs2047876
Chromosome Location	chr2:125309057-125309058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10172675	0.89[CEU][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes]
rs10185849	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs10496637	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11123050	0.91[CHB][hapmap]
rs11682973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs11888767	0.91[CHB][hapmap]
rs11896097	0.91[CHB][hapmap]
rs11899391	0.85[CHB][hapmap]
rs11899392	0.89[CHB][hapmap]
rs12464032	0.91[CHB][hapmap]
rs12464048	0.91[CHB][hapmap]
rs12468237	0.91[CHB][hapmap]
rs12470517	0.91[CHB][hapmap]
rs12623983	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12711680	0.81[CHB][hapmap]
rs13030176	0.82[CHB][hapmap]
rs1504006	0.91[CHB][hapmap]
rs1504007	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1504008	0.91[CHB][hapmap]
rs1504009	0.91[CHB][hapmap]
rs1504010	0.86[CHB][hapmap]
rs17011693	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs17011723	0.91[CHB][hapmap]
rs17011727	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs17011734	0.82[CHB][hapmap]
rs1857690	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1857691	0.91[CHB][hapmap]
rs1857694	0.91[CHB][hapmap]
rs1875785	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1910527	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2047875	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2047877	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2421091	0.86[CHD][hapmap]
rs4402762	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs4848246	0.91[CHB][hapmap]
rs6541959	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs6707944	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs7590741	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7601716	0.96[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125307600-125310200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:125307800-125310200	Enhancers	Brain Germinal Matrix	brain
3	chr2:125308800-125309200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:125308800-125309600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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