Variant report

Variant	rs17673411
Chromosome Location	chr2:125106560-125106561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496631	1.00[AFR][1000 genomes]
rs1358669	1.00[AFR][1000 genomes]
rs1529296	1.00[AFR][1000 genomes]
rs17319680	1.00[AFR][1000 genomes]
rs17665763	0.83[AFR][1000 genomes]
rs17665782	1.00[AFR][1000 genomes]
rs17666152	1.00[AFR][1000 genomes]
rs17666488	1.00[AFR][1000 genomes]
rs17667754	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17722749	1.00[AFR][1000 genomes]
rs17724036	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2059980	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv523624	chr2:125099924-125112975	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125105200-125108800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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