Variant report

Variant	rs11680902
Chromosome Location	chr2:124759570-124759571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11675400	1.00[ASN][1000 genomes]
rs11677801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11678185	1.00[ASN][1000 genomes]
rs11680010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686392	1.00[ASN][1000 genomes]
rs11689672	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs11693472	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693557	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694708	1.00[ASN][1000 genomes]
rs17209500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17212475	1.00[ASN][1000 genomes]
rs17269066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17270902	1.00[ASN][1000 genomes]
rs17319680	1.00[ASN][1000 genomes]
rs73954526	1.00[ASN][1000 genomes]
rs73954528	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124758800-124760200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr2:124759200-124759800	Enhancers	Fetal Brain Female	brain
3	chr2:124759400-124759600	Bivalent Enhancer	Fetal Brain Male	brain
4	chr2:124759400-124759800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:124759400-124759800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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