Variant report

Variant	rs17269122
Chromosome Location	chr2:124760087-124760088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11675400	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11677559	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11677801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11678185	1.00[ASN][1000 genomes]
rs11680010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686392	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11689672	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11693472	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693557	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694708	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1213971	1.00[CHB][hapmap]
rs1439131	1.00[CHB][hapmap]
rs17209500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211596	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17212475	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17213071	1.00[CHB][hapmap]
rs17213092	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17269066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17270902	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17279088	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17319771	1.00[CHB][hapmap]
rs2420554	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs73954526	1.00[ASN][1000 genomes]
rs73954528	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124758800-124760200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr2:124760000-124760400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links