Variant report

Variant	rs13426564
Chromosome Location	chr2:124786405-124786406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17010758	0.88[JPT][hapmap]
rs17010759	0.88[JPT][hapmap]
rs17010772	0.93[JPT][hapmap]
rs17010799	0.94[JPT][hapmap]
rs17010907	0.93[JPT][hapmap]
rs1921812	0.82[YRI][hapmap]
rs71428134	0.98[ASN][1000 genomes]
rs7567589	0.89[YRI][hapmap]
rs7584999	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124784000-124787000	Active TSS	Fetal Brain Female	brain
2	chr2:124785600-124790400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:124786200-124786600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:124786200-124787200	Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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