Variant report
| Variant | rs17010967 |
|---|---|
| Chromosome Location | chr12:83973871-83973872 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1156936 | 0.92[EUR][1000 genomes] |
| rs1304347 | 0.92[EUR][1000 genomes] |
| rs17011014 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2036148 | 0.92[EUR][1000 genomes] |
| rs2036149 | 0.92[EUR][1000 genomes] |
| rs7136287 | 0.92[EUR][1000 genomes] |
| rs7137518 | 1.00[AMR][1000 genomes] |
| rs73141426 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73147092 | 1.00[AMR][1000 genomes] |
| rs73147867 | 0.92[EUR][1000 genomes] |
| rs73147868 | 0.92[EUR][1000 genomes] |
| rs73149739 | 0.92[EUR][1000 genomes] |
| rs73149744 | 0.92[EUR][1000 genomes] |
| rs73149792 | 0.92[EUR][1000 genomes] |
| rs73151860 | 1.00[AMR][1000 genomes] |
| rs73161108 | 0.92[EUR][1000 genomes] |
| rs73161109 | 0.92[EUR][1000 genomes] |
| rs73161127 | 0.92[EUR][1000 genomes] |
| rs73161147 | 0.92[EUR][1000 genomes] |
| rs73161150 | 0.92[EUR][1000 genomes] |
| rs73161152 | 0.92[EUR][1000 genomes] |
| rs73161155 | 0.92[EUR][1000 genomes] |
| rs7955659 | 0.92[EUR][1000 genomes] |
| rs7962020 | 0.92[EUR][1000 genomes] |
| rs7968087 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7979197 | 0.92[EUR][1000 genomes] |
| rs7979696 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv521849 | chr12:83013783-83991479 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:83973600-83974200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
