Variant report

Variant	rs73141426
Chromosome Location	chr12:83885330-83885331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1156936	0.92[EUR][1000 genomes]
rs1304347	0.92[EUR][1000 genomes]
rs17010967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011014	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2036148	0.92[EUR][1000 genomes]
rs2036149	0.92[EUR][1000 genomes]
rs7136287	0.92[EUR][1000 genomes]
rs73147092	1.00[AMR][1000 genomes]
rs73147867	0.92[EUR][1000 genomes]
rs73147868	0.92[EUR][1000 genomes]
rs73149739	0.92[EUR][1000 genomes]
rs73149744	0.92[EUR][1000 genomes]
rs73151732	0.81[EUR][1000 genomes]
rs73151749	0.81[EUR][1000 genomes]
rs73161108	0.92[EUR][1000 genomes]
rs73161109	0.92[EUR][1000 genomes]
rs73161127	0.92[EUR][1000 genomes]
rs73161147	0.92[EUR][1000 genomes]
rs73161150	0.92[EUR][1000 genomes]
rs73161152	0.92[EUR][1000 genomes]
rs73161155	0.92[EUR][1000 genomes]
rs7955659	0.92[EUR][1000 genomes]
rs7962020	0.92[EUR][1000 genomes]
rs7963393	0.87[AFR][1000 genomes]
rs7968087	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7979197	0.92[EUR][1000 genomes]
rs7979696	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1042674	chr12:83620899-83942628	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037194	chr12:83859925-83910630	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041589	chr12:83861093-83890080	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83879800-83886200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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