Variant report

Variant	rs17011095
Chromosome Location	chr1:222086953-222086954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11579212	0.87[ASN][1000 genomes]
rs17011062	0.90[ASN][1000 genomes]
rs17011068	0.90[ASN][1000 genomes]
rs17011072	0.90[ASN][1000 genomes]
rs17011101	1.00[ASN][1000 genomes]
rs17011133	0.80[ASN][1000 genomes]
rs17011142	0.80[ASN][1000 genomes]
rs56905116	0.80[ASN][1000 genomes]
rs57015712	0.80[ASN][1000 genomes]
rs57257681	0.98[ASN][1000 genomes]
rs58687635	0.80[ASN][1000 genomes]
rs60321950	0.80[ASN][1000 genomes]
rs60602367	0.80[ASN][1000 genomes]
rs60617250	0.80[ASN][1000 genomes]
rs60839601	0.80[ASN][1000 genomes]
rs60965848	0.80[ASN][1000 genomes]
rs74145036	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222081200-222097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222083200-222092600	Weak transcription	HSMMtube	muscle
4	chr1:222083600-222092400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:222084800-222087200	Weak transcription	Esophagus	oesophagus
6	chr1:222086000-222097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:222086600-222087200	Enhancers	HMEC	breast
8	chr1:222086800-222087200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:222086800-222087600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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