Variant report

Variant	rs57257681
Chromosome Location	chr1:222092732-222092733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11579212	0.85[ASN][1000 genomes]
rs17011062	0.87[ASN][1000 genomes]
rs17011068	0.87[ASN][1000 genomes]
rs17011072	0.87[ASN][1000 genomes]
rs17011095	0.98[ASN][1000 genomes]
rs17011101	0.98[ASN][1000 genomes]
rs17011133	0.82[ASN][1000 genomes]
rs17011142	0.82[ASN][1000 genomes]
rs56905116	0.82[ASN][1000 genomes]
rs57015712	0.82[ASN][1000 genomes]
rs58687635	0.82[ASN][1000 genomes]
rs60321950	0.82[ASN][1000 genomes]
rs60602367	0.82[ASN][1000 genomes]
rs60617250	0.82[ASN][1000 genomes]
rs60839601	0.82[ASN][1000 genomes]
rs60965848	0.82[ASN][1000 genomes]
rs74145036	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222081200-222097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222086000-222097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:222087600-222099200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:222092400-222092800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:222092600-222092800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:222092600-222092800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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