Variant report

Variant	rs17011164
Chromosome Location	chr2:31486038-31486039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31148669..31151413-chr2:31485318..31487075,2	MCF-7	breast:
2	chr2:31483534..31486421-chr2:31490300..31493198,2	K562	blood:
3	chr2:31485553..31488130-chr2:31494997..31497171,2	MCF-7	breast:
4	chr2:31483959..31486776-chr2:31489783..31491463,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13377	1.00[CHD][hapmap]
rs15056	1.00[CHD][hapmap]
rs17011261	1.00[AMR][1000 genomes]
rs7589099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31457800-31491200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31458200-31489000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:31458800-31490200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:31458800-31493600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:31459400-31498600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:31462000-31495600	Weak transcription	Fetal Lung	lung
7	chr2:31462400-31491000	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:31463400-31491800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:31463600-31501400	Weak transcription	Pancreas	Pancrea
10	chr2:31463800-31486400	Weak transcription	Adipose Nuclei	Adipose
11	chr2:31465400-31493600	Weak transcription	HSMMtube	muscle
12	chr2:31467000-31490600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:31467800-31491000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:31468000-31492600	Weak transcription	Fetal Brain Male	brain
15	chr2:31468200-31501600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr2:31469400-31491800	Weak transcription	Osteobl	bone
17	chr2:31470000-31491800	Weak transcription	NHDF-Ad	bronchial
18	chr2:31471400-31489800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:31472000-31486800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:31472200-31486600	Weak transcription	Fetal Kidney	kidney
21	chr2:31472800-31490600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:31477000-31493400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:31478000-31486800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:31478000-31491600	Weak transcription	HMEC	breast
25	chr2:31479400-31486200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:31479600-31491000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:31479600-31493000	Weak transcription	NHEK	skin
28	chr2:31479800-31486400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:31480000-31488400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:31480000-31489000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr2:31480000-31492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:31480200-31486400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:31480200-31491800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr2:31480600-31486800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:31480600-31492000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:31480800-31486400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:31480800-31486600	Weak transcription	Fetal Heart	heart
38	chr2:31480800-31487400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:31480800-31489200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr2:31480800-31492000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:31481000-31490600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:31481200-31491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr2:31481400-31492200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:31481600-31489000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr2:31482000-31501000	Weak transcription	Fetal Intestine Large	intestine
46	chr2:31482600-31501400	Weak transcription	Liver	Liver
47	chr2:31482800-31490600	Weak transcription	A549	lung
48	chr2:31483000-31487200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr2:31483200-31487000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:31483400-31487000	Strong transcription	Fetal Stomach	stomach

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