Variant report

Variant	rs13377
Chromosome Location	chr2:31491075-31491076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31483959..31486776-chr2:31489783..31491463,2	MCF-7	breast:
2	chr2:31483534..31486421-chr2:31490300..31493198,2	K562	blood:
3	chr2:31361127..31362050-chr2:31490833..31491482,2	MCF-7	breast:
4	chr2:30934391..30935158-chr2:31490931..31491785,3	MCF-7	breast:
5	chr2:31483331..31483984-chr2:31490939..31491846,2	K562	blood:

Variant related genes	Relation type
ENSG00000158089	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs15056	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011164	1.00[CHD][hapmap]
rs17011230	1.00[CHB][hapmap]
rs207440	1.00[CHB][hapmap]
rs207445	1.00[CHB][hapmap]
rs55994653	1.00[ASN][1000 genomes]
rs56060668	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31457800-31491200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31458800-31493600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:31459400-31498600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:31462000-31495600	Weak transcription	Fetal Lung	lung
5	chr2:31463400-31491800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:31463600-31501400	Weak transcription	Pancreas	Pancrea
7	chr2:31465400-31493600	Weak transcription	HSMMtube	muscle
8	chr2:31468000-31492600	Weak transcription	Fetal Brain Male	brain
9	chr2:31468200-31501600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:31469400-31491800	Weak transcription	Osteobl	bone
11	chr2:31470000-31491800	Weak transcription	NHDF-Ad	bronchial
12	chr2:31477000-31493400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:31478000-31491600	Weak transcription	HMEC	breast
14	chr2:31479600-31493000	Weak transcription	NHEK	skin
15	chr2:31480000-31492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:31480200-31491800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:31480600-31492000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:31480800-31492000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:31481200-31491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:31481400-31492200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:31482000-31501000	Weak transcription	Fetal Intestine Large	intestine
22	chr2:31482600-31501400	Weak transcription	Liver	Liver
23	chr2:31485200-31491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:31485400-31491200	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:31485400-31491600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:31485400-31495600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:31486600-31510000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr2:31486800-31491400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:31486800-31492600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:31487000-31491800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:31487200-31491400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:31487200-31491800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:31487200-31493000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:31487200-31494000	Weak transcription	Fetal Kidney	kidney
35	chr2:31487400-31492200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr2:31488600-31492200	Weak transcription	NH-A	brain
37	chr2:31488800-31491400	Strong transcription	Fetal Brain Female	brain
38	chr2:31489000-31491200	Strong transcription	Fetal Stomach	stomach
39	chr2:31489000-31492200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr2:31489200-31491600	Enhancers	Fetal Heart	heart
41	chr2:31489400-31492000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:31489400-31492000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:31489600-31491200	Weak transcription	Brain Angular Gyrus	brain
44	chr2:31489600-31491800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr2:31489600-31493600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr2:31489600-31494800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:31489600-31495200	Weak transcription	Gastric	stomach
48	chr2:31489800-31491400	Weak transcription	Left Ventricle	heart
49	chr2:31489800-31491800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:31489800-31491800	Weak transcription	Aorta	Aorta

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