Variant report

Variant	rs17011563
Chromosome Location	chr10:50176407-50176408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1317894	0.95[GIH][hapmap];0.90[TSI][hapmap]
rs17009409	1.00[ASN][1000 genomes]
rs17009410	0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs17011569	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838434	1.00[ASN][1000 genomes]
rs4838435	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838436	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838659	1.00[ASN][1000 genomes]
rs4838661	1.00[ASN][1000 genomes]
rs4838662	1.00[ASN][1000 genomes]
rs4838664	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838665	1.00[ASN][1000 genomes]
rs59860513	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733240	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73298951	1.00[ASN][1000 genomes]
rs73298966	1.00[ASN][1000 genomes]
rs73298969	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
2	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood
7	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50161600-50177800	Weak transcription	Lung	lung
9	chr10:50163400-50189000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:50173200-50178600	Weak transcription	Primary T cells from cord blood	blood
11	chr10:50174000-50187400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50174200-50186800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50174600-50189400	Weak transcription	Ovary	ovary
14	chr10:50174800-50178800	Weak transcription	Right Atrium	heart
15	chr10:50175200-50178400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:50175200-50189400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:50176000-50177000	Enhancers	Right Ventricle	heart
18	chr10:50176200-50177200	Genic enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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