Variant report

Variant	rs17011573
Chromosome Location	chr4:87155001-87155002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10009942	1.00[CHB][hapmap]
rs10033283	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs10516771	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008675	1.00[CHB][hapmap]
rs17011341	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs17011556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011623	0.94[MKK][hapmap]
rs17011630	0.82[LWK][hapmap];1.00[MKK][hapmap]
rs17011643	1.00[MKK][hapmap]
rs28849082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4351013	1.00[CHB][hapmap]
rs59257377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv515925	chr4:87142248-87165758	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763374	chr4:87151085-87184332	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87142600-87157800	Weak transcription	Fetal Stomach	stomach
2	chr4:87149200-87186200	Weak transcription	Ovary	ovary
3	chr4:87153200-87165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:87153800-87155200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:87154000-87155200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:87154000-87155200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:87154000-87155400	Enhancers	HMEC	breast
8	chr4:87154000-87155600	Enhancers	NHEK	skin
9	chr4:87154200-87155200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:87154200-87155400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:87154400-87155200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:87154400-87155200	Enhancers	Osteobl	bone
13	chr4:87154400-87155400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:87154600-87155200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:87154600-87155200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:87154600-87155400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:87154600-87155400	Enhancers	HSMMtube	muscle
18	chr4:87154600-87155400	Enhancers	NH-A	brain
19	chr4:87154600-87155600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:87154800-87155200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:87154800-87155400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:87155000-87155400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:87155000-87156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:87155000-87165800	Weak transcription	Brain Inferior Temporal Lobe	brain

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