Variant report

Variant	rs17012660
Chromosome Location	chr2:33427499-33427500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10048778	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10167324	1.00[CEU][hapmap]
rs10167399	1.00[CEU][hapmap]
rs10201412	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10205851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13387581	1.00[CEU][hapmap]
rs13417478	1.00[CEU][hapmap]
rs13417974	1.00[CEU][hapmap]
rs17012689	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6708543	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6721333	1.00[CEU][hapmap]
rs6752708	1.00[CEU][hapmap]
rs72858011	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33409200-33441600	Weak transcription	Psoas Muscle	Psoas
3	chr2:33410400-33438000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:33414000-33427800	Weak transcription	Right Ventricle	heart
5	chr2:33414000-33434200	Weak transcription	HUVEC	blood vessel
6	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
7	chr2:33415000-33434400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:33415200-33427600	Weak transcription	Left Ventricle	heart
9	chr2:33415200-33441600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:33415400-33441600	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:33415600-33431800	Weak transcription	NHDF-Ad	bronchial
12	chr2:33415600-33434200	Weak transcription	K562	blood
13	chr2:33415800-33431800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:33417400-33431800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:33418200-33433400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:33418400-33435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:33419000-33434200	Weak transcription	NH-A	brain
18	chr2:33419800-33427800	Weak transcription	Aorta	Aorta
19	chr2:33420000-33432000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:33420800-33430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:33423000-33439400	Weak transcription	Pancreas	Pancrea
22	chr2:33423000-33439600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:33426600-33435000	Weak transcription	Gastric	stomach
24	chr2:33426800-33428200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr2:33427000-33427600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:33427000-33428000	Enhancers	Ovary	ovary
27	chr2:33427000-33428200	Genic enhancers	Stomach Smooth Muscle	stomach
28	chr2:33427000-33428400	Enhancers	Fetal Heart	heart
29	chr2:33427200-33427600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:33427200-33428000	Weak transcription	Osteobl	bone
31	chr2:33427400-33427600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:33427400-33427600	Enhancers	NHLF	lung
33	chr2:33427400-33428000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:33427400-33428000	Enhancers	Liver	Liver
35	chr2:33427400-33432200	Weak transcription	Fetal Lung	lung

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