Variant report

Variant	rs17013265
Chromosome Location	chr4:129316075-129316076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10001690	1.00[MEX][hapmap]
rs17013357	1.00[MEX][hapmap]
rs58376583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61597154	1.00[AMR][1000 genomes]
rs6845290	1.00[MEX][hapmap]
rs72930175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129308200-129317000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:129314000-129317000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:129314000-129317200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:129314800-129316400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:129315000-129316200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:129315400-129316400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:129315400-129317000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:129315600-129316200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:129315600-129316400	Enhancers	NHDF-Ad	bronchial
10	chr4:129315800-129316200	Enhancers	NHEK	skin
11	chr4:129316000-129316200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:129316000-129316200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:129316000-129316200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:129316000-129316200	Enhancers	K562	blood
15	chr4:129316000-129316200	Enhancers	NHLF	lung
16	chr4:129316000-129316400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:129316000-129316400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr4:129316000-129316400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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