Variant report

Variant	rs6845290
Chromosome Location	chr4:129217267-129217268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129216692..129219211-chr4:129248139..129251000,2	MCF-7	breast:
2	chr4:129215263..129217433-chr4:129217570..129219858,4	K562	blood:
3	chr4:129215849..129218784-chr4:129229247..129231536,2	K562	blood:
4	chr4:129215061..129219727-chr4:129220419..129226220,7	K562	blood:
5	chr4:129211991..129214789-chr4:129216547..129219460,2	K562	blood:
6	chr4:129208338..129210994-chr4:129216298..129218698,3	K562	blood:

Variant related genes	Relation type
ENSG00000251432	Chromatin interaction
ENSG00000164040	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10001690	0.87[ASW][hapmap];1.00[MEX][hapmap]
rs10049564	1.00[MEX][hapmap]
rs17013265	1.00[MEX][hapmap]
rs17013357	1.00[MEX][hapmap]
rs41298545	0.83[AFR][1000 genomes]
rs41298567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534677	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129210000-129224400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:129210200-129228600	Weak transcription	Left Ventricle	heart
3	chr4:129210200-129230400	Weak transcription	Ovary	ovary
4	chr4:129210200-129245800	Weak transcription	Esophagus	oesophagus
5	chr4:129210400-129217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:129210400-129218000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:129210400-129218600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:129210400-129222400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:129210400-129226200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:129210400-129227200	Weak transcription	Pancreas	Pancrea
11	chr4:129210400-129227800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:129210400-129231000	Weak transcription	HSMMtube	muscle
13	chr4:129210400-129231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:129210400-129235800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:129210400-129238000	Weak transcription	Thymus	Thymus
16	chr4:129210400-129240000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:129210400-129246400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:129210400-129247600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:129210600-129218000	Weak transcription	Primary B cells from cord blood	blood
20	chr4:129210600-129222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:129210600-129231000	Weak transcription	Osteobl	bone
22	chr4:129210600-129249800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:129210800-129219400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:129210800-129221200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:129210800-129226400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:129210800-129227800	Weak transcription	Fetal Brain Male	brain
27	chr4:129210800-129230400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:129210800-129233000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:129211000-129218600	Weak transcription	Primary T cells from cord blood	blood
30	chr4:129211000-129226200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:129211000-129231000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:129211000-129244200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:129211000-129246400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:129211200-129220000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:129211200-129223400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:129211200-129231200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:129211200-129244000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:129211200-129248200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr4:129211200-129254400	Weak transcription	Brain Substantia Nigra	brain
40	chr4:129211400-129228200	Weak transcription	GM12878-XiMat	blood
41	chr4:129211400-129228600	Weak transcription	Small Intestine	intestine
42	chr4:129211400-129231200	Weak transcription	A549	lung
43	chr4:129213800-129226400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr4:129214400-129218400	Weak transcription	Liver	Liver
45	chr4:129215800-129218000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:129216000-129222200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:129216000-129222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:129216600-129231400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:129216800-129228400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:129216800-129228600	Weak transcription	Gastric	stomach

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