Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10186167	1.00[EUR][1000 genomes]
rs10209686	1.00[EUR][1000 genomes]
rs13382600	1.00[EUR][1000 genomes]
rs13405495	1.00[EUR][1000 genomes]
rs1371433	1.00[EUR][1000 genomes]
rs1446715	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17013488	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs17013539	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013582	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013625	1.00[EUR][1000 genomes]
rs17013711	1.00[EUR][1000 genomes]
rs17013729	1.00[EUR][1000 genomes]
rs17013732	1.00[EUR][1000 genomes]
rs17406084	0.90[YRI][hapmap]
rs1900343	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142792	1.00[EUR][1000 genomes]
rs57175018	1.00[EUR][1000 genomes]
rs57378305	1.00[AMR][1000 genomes]
rs57624759	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58065105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58272699	0.89[AMR][1000 genomes]
rs58936600	1.00[EUR][1000 genomes]
rs60029001	1.00[EUR][1000 genomes]
rs61332902	1.00[EUR][1000 genomes]
rs72911856	1.00[EUR][1000 genomes]
rs72912512	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912528	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912539	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77225000-77231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:77228600-77233800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:77229200-77233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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