Variant report

Variant	rs72912528
Chromosome Location	chr2:77249520-77249521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10186167	1.00[EUR][1000 genomes]
rs1371433	1.00[EUR][1000 genomes]
rs1446715	1.00[EUR][1000 genomes]
rs17013488	1.00[EUR][1000 genomes]
rs17013539	1.00[EUR][1000 genomes]
rs17013579	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013582	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013625	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013711	1.00[EUR][1000 genomes]
rs17013729	1.00[EUR][1000 genomes]
rs17013732	1.00[EUR][1000 genomes]
rs1900343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142792	1.00[EUR][1000 genomes]
rs57175018	1.00[EUR][1000 genomes]
rs57378305	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57624759	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58065105	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58936600	1.00[EUR][1000 genomes]
rs60029001	1.00[EUR][1000 genomes]
rs61332902	1.00[EUR][1000 genomes]
rs72911856	1.00[EUR][1000 genomes]
rs72912512	1.00[EUR][1000 genomes]
rs72912539	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77244800-77249600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:77244800-77249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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