Variant report

Variant	rs17013654
Chromosome Location	chr2:33897127-33897128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13020506	0.86[ASW][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap]
rs17013637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55890165	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57178085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58575350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59509236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59961640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61495557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928946	0.91[EUR][1000 genomes]
rs73928948	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73928949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928957	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73928958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33891200-33903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:33891600-33903000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:33896000-33898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:33897000-33899000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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