Variant report
| Variant | rs73928948 |
|---|---|
| Chromosome Location | chr2:33872044-33872045 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:33869867..33872136-chr2:33872580..33874510,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12990303 | 0.82[AFR][1000 genomes] |
| rs17013637 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17013639 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17013652 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17013654 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34321218 | 0.82[AFR][1000 genomes] |
| rs34482270 | 0.82[AFR][1000 genomes] |
| rs35630933 | 0.82[AFR][1000 genomes] |
| rs55890165 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs57178085 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs58575350 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs59509236 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs59961640 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61495557 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928946 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73928949 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928950 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928951 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928956 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928957 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73928958 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3350238 | chr2:33849408-33979026 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:33869800-33878000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
