Variant report

Variant	rs17014365
Chromosome Location	chr1:209535087-209535088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209532175..209545038-chr1:209598052..209610156,35	MCF-7	breast:
2	chr1:209527253..209544360-chr1:209599669..209610889,45	MCF-7	breast:
3	chr1:209531708..209533429-chr1:209534733..209536310,2	MCF-7	breast:
4	chr1:209533760..209536298-chr1:209538566..209540091,2	K562	blood:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12119464	1.00[YRI][hapmap]
rs12137788	1.00[YRI][hapmap]
rs13375195	1.00[YRI][hapmap]
rs17014409	1.00[ASW][hapmap];0.85[LWK][hapmap]
rs9804114	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209526400-209545600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:209528400-209536200	Weak transcription	Esophagus	oesophagus
3	chr1:209528400-209536400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:209529800-209547000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:209530200-209536000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:209530400-209536000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:209530800-209536000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:209530800-209536000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:209530800-209536200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:209530800-209536200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:209530800-209536200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:209530800-209536200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:209530800-209536200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:209530800-209536400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:209531000-209536200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:209531000-209536200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:209534000-209535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:209534000-209536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:209534000-209536000	Weak transcription	HMEC	breast
20	chr1:209534200-209535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:209534400-209536200	Weak transcription	Fetal Intestine Large	intestine
22	chr1:209534400-209536200	Weak transcription	Fetal Intestine Small	intestine
23	chr1:209534600-209535800	Weak transcription	NHEK	skin
24	chr1:209535000-209536000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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