Variant report

Variant	rs17014409
Chromosome Location	chr1:209550592-209550593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209547762..209552825-chr1:209601391..209605097,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17014346	1.00[AFR][1000 genomes]
rs17014356	1.00[AFR][1000 genomes]
rs17014360	0.89[AFR][1000 genomes]
rs17014362	1.00[AFR][1000 genomes]
rs17014365	1.00[ASW][hapmap];0.85[LWK][hapmap]
rs17014368	0.89[AFR][1000 genomes]
rs17014373	0.89[AFR][1000 genomes]
rs17014424	1.00[AFR][1000 genomes]
rs17014428	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209535800-209550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209546600-209552800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:209546800-209550600	Enhancers	NHEK	skin
4	chr1:209547400-209556000	Weak transcription	Esophagus	oesophagus
5	chr1:209549000-209550600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:209549000-209552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:209549400-209551400	Weak transcription	Fetal Lung	lung
8	chr1:209549400-209551600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:209549400-209552400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:209549400-209552800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:209549400-209556200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:209549400-209556600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:209549600-209552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:209549600-209557200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:209549800-209551800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:209549800-209552000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:209549800-209552400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:209549800-209553000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:209549800-209560400	Weak transcription	HSMM	muscle
20	chr1:209550000-209551800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:209550000-209552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:209550000-209552600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:209550000-209552600	Weak transcription	Osteobl	bone
24	chr1:209550000-209555400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:209550000-209555400	Weak transcription	Fetal Brain Male	brain
26	chr1:209550200-209550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:209550200-209551600	Weak transcription	HMEC	breast
28	chr1:209550200-209552400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:209550200-209555200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:209550200-209555400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:209550200-209555400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:209550200-209560600	Weak transcription	Muscle Satellite Cultured Cells	--

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