Variant report

Variant	rs17014428
Chromosome Location	chr1:209568660-209568661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209565872..209577230-chr1:209599783..209610462,26	MCF-7	breast:
2	chr1:209568284..209570251-chr1:209593131..209594689,2	MCF-7	breast:
3	chr1:209553994..209556272-chr1:209567588..209570552,2	MCF-7	breast:
4	chr1:209566790..209569253-chr1:209606717..209608620,2	MCF-7	breast:
5	chr1:209568446..209570232-chr1:209601693..209603599,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17014346	1.00[AFR][1000 genomes]
rs17014356	1.00[AFR][1000 genomes]
rs17014360	0.89[AFR][1000 genomes]
rs17014362	1.00[AFR][1000 genomes]
rs17014368	0.89[AFR][1000 genomes]
rs17014373	0.89[AFR][1000 genomes]
rs17014409	1.00[AFR][1000 genomes]
rs17014424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209561000-209571400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209563200-209571400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:209563200-209572800	Weak transcription	Esophagus	oesophagus
4	chr1:209563400-209568800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:209563600-209571200	Weak transcription	HSMM	muscle
6	chr1:209563600-209571400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:209563600-209571600	Weak transcription	NH-A	brain
8	chr1:209565400-209570000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:209565800-209571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:209566000-209571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:209566200-209571400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:209566400-209571200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:209567200-209568800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:209567200-209569200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:209567200-209569200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:209567200-209584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:209567400-209569200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:209567400-209571200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:209567400-209575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:209567800-209569400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:209567800-209571800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:209568000-209569400	Enhancers	Fetal Stomach	stomach
23	chr1:209568000-209569600	Enhancers	A549	lung
24	chr1:209568200-209569000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr1:209568200-209569600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:209568200-209571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:209568400-209569000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:209568400-209569200	Active TSS	Brain Hippocampus Middle	brain
29	chr1:209568400-209578200	Enhancers	HMEC	breast
30	chr1:209568600-209569000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:209568600-209569000	Enhancers	Brain Substantia Nigra	brain
32	chr1:209568600-209569000	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr1:209568600-209569000	Flanking Active TSS	NHEK	skin
34	chr1:209568600-209569000	Enhancers	Osteobl	bone
35	chr1:209568600-209569200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:209568600-209569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:209568600-209569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:209568600-209569200	Enhancers	NHLF	lung
39	chr1:209568600-209569400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:209568600-209569400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:209568600-209569600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr1:209568600-209569600	Enhancers	Hela-S3	cervix

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