Variant report

Variant	rs17014346
Chromosome Location	chr1:209529020-209529021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209524634..209532045-chr1:209599866..209610404,18	MCF-7	breast:
2	chr1:209528146..209530754-chr1:209539138..209540797,2	MCF-7	breast:
3	chr1:209527807..209529591-chr1:209535703..209538583,2	MCF-7	breast:
4	chr1:209527253..209544360-chr1:209599669..209610889,45	MCF-7	breast:
5	chr1:209526627..209529456-chr1:209583930..209587370,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17014356	1.00[AFR][1000 genomes]
rs17014360	0.89[AFR][1000 genomes]
rs17014362	1.00[AFR][1000 genomes]
rs17014368	0.89[AFR][1000 genomes]
rs17014373	0.89[AFR][1000 genomes]
rs17014409	1.00[AFR][1000 genomes]
rs17014424	1.00[AFR][1000 genomes]
rs17014428	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209522800-209529200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:209525200-209529800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:209526400-209545600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:209527000-209530800	Enhancers	HMEC	breast
5	chr1:209527200-209531000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:209527400-209529400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:209527400-209529400	Enhancers	Hela-S3	cervix
8	chr1:209527400-209530400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:209527400-209530800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:209527400-209530800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:209527400-209530800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:209527600-209530800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:209527600-209530800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:209527600-209530800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:209527600-209531000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:209527800-209530200	Weak transcription	HSMMtube	muscle
17	chr1:209528000-209529600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:209528200-209529600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:209528200-209530800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr1:209528400-209529600	Enhancers	Fetal Brain Male	brain
21	chr1:209528400-209536200	Weak transcription	Esophagus	oesophagus
22	chr1:209528400-209536400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:209528800-209529200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:209528800-209529600	Flanking Active TSS	NHEK	skin
25	chr1:209529000-209529200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:209529000-209529200	Enhancers	Fetal Stomach	stomach
27	chr1:209529000-209529400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:209529000-209529800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:209529000-209530000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:209529000-209531000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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