Variant report

Variant	rs17014735
Chromosome Location	chr4:130326758-130326759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12510624	0.81[ASN][1000 genomes]
rs1433378	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4440237	0.92[ASN][1000 genomes]
rs4540061	0.92[ASN][1000 genomes]
rs56361313	0.92[ASN][1000 genomes]
rs60874996	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61554187	0.91[ASN][1000 genomes]
rs62309611	0.93[ASN][1000 genomes]
rs62309616	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830060	chr4:130315067-130471025	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130325000-130326800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:130326000-130327600	Enhancers	Brain Germinal Matrix	brain
3	chr4:130326600-130327000	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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