Variant report

Variant	rs61554187
Chromosome Location	chr4:130291377-130291378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12506624	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12506696	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12510624	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1433378	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17014735	0.91[ASN][1000 genomes]
rs4440237	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4540061	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55792344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55875663	0.82[EUR][1000 genomes]
rs56108227	0.82[EUR][1000 genomes]
rs56265309	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56361313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56690775	0.82[EUR][1000 genomes]
rs56982957	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61070104	0.82[EUR][1000 genomes]
rs61455970	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62309611	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62309616	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62317276	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130284800-130292000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:130285200-130293600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:130290800-130292000	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:130290800-130293000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:130291000-130291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:130291200-130298000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links