Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12499334	0.84[EUR][1000 genomes]
rs12505175	0.84[EUR][1000 genomes]
rs12506624	0.82[EUR][1000 genomes]
rs12506696	0.82[EUR][1000 genomes]
rs12512124	0.85[ASN][1000 genomes]
rs17014612	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17014621	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4498146	0.84[EUR][1000 genomes]
rs4540061	0.82[EUR][1000 genomes]
rs4975215	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55733425	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55792344	0.86[EUR][1000 genomes]
rs56108227	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56361313	0.82[EUR][1000 genomes]
rs56690775	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56982957	0.87[EUR][1000 genomes]
rs57182662	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59196871	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59326597	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59634627	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61070104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61455970	0.82[EUR][1000 genomes]
rs61554187	0.82[EUR][1000 genomes]
rs62309611	0.82[EUR][1000 genomes]
rs62309616	0.80[EUR][1000 genomes]
rs62317267	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62317276	0.84[EUR][1000 genomes]
rs67778905	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805721	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv1811943	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130275400-130279600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:130275600-130277600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:130276000-130277400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:130276000-130277600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:130276200-130277400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:130276200-130277600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:130276600-130279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:130276800-130279600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:130276800-130279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:130277000-130277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:130277000-130279800	Weak transcription	Fetal Lung	lung
12	chr4:130277200-130277800	Enhancers	Fetal Heart	heart
13	chr4:130277200-130279600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:130277200-130279800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:130277200-130284000	Weak transcription	Colon Smooth Muscle	Colon

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